Chinese Journal OF Rice Science ›› 2016, Vol. 30 ›› Issue (3): 223-231.DOI: 10.16819/j.1001-7216.2016.5177
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Xin LIU, Heng ZHANG, Hu-fei KAN, Li-shuai ZHOU, Hao HUANG, Lin-lin SONG, Huan-chen ZHAI, Jun ZHANG, Guo-dong LU*()
Received:
2015-11-30
Revised:
2016-03-16
Online:
2016-05-10
Published:
2016-05-10
Contact:
Guo-dong LU
刘鑫, 张恒, 阚虎飞, 周立帅, 黄昊, 宋林林, 翟焕趁, 张君, 鲁国东*()
通讯作者:
鲁国东
基金资助:
CLC Number:
Xin LIU, Heng ZHANG, Hu-fei KAN, Li-shuai ZHOU, Hao HUANG, Lin-lin SONG, Huan-chen ZHAI, Jun ZHANG, Guo-dong LU. Bioinformatic and Expression Analysis of Rice Ubiquitin-conjugating Enzyme Gene Family[J]. Chinese Journal OF Rice Science, 2016, 30(3): 223-231.
刘鑫, 张恒, 阚虎飞, 周立帅, 黄昊, 宋林林, 翟焕趁, 张君, 鲁国东. 水稻泛素结合酶基因家族的生物信息学与表达分析[J]. 中国水稻科学, 2016, 30(3): 223-231.
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URL: http://www.ricesci.cn/EN/10.16819/j.1001-7216.2016.5177
基因 Gene | 表达诱导因素 Expression inducing factors | |||||
---|---|---|---|---|---|---|
稻瘟病菌侵染 Blast fungus infection | 盐胁迫 Salinity stress | 脱落酸 Abscisic acid | 赤霉素 Gibberellin | 细胞分裂素 Cytokinin | 寡聚糖几丁质 Chitin oligosaccharide | |
OsUBC1 | + | + | + | + | + | + |
OsUBC2 | + | + | + | + | + | + |
OsUBC3 | + | + | n | n | + | n |
OsUBC4 | + | + | + | + | + | + |
OsUBC5 | + | + | + | + | + | + |
OsUBC6 | + | + | + | + | + | + |
OsUBC7 | + | + | n | n | + | n |
OsUBC8 | + | + | + | + | + | + |
OsUBC9 | n | n | + | + | + | + |
OsUBC10 | + | + | + | + | + | + |
OsUBC11 | + | + | + | + | + | + |
OsUBC12 | + | + | n | n | + | n |
OsUBC13 | + | + | n | n | + | n |
OsUBC14 | n | n | + | + | n | + |
OsUBC15 | n | n | n | n | n | n |
OsUBC16 | + | + | + | + | + | + |
OsUBC17 | + | + | + | + | + | + |
OsUBC18 | + | + | + | + | + | + |
OsUBC19 | + | + | + | + | + | + |
OsUBC20 | N | N | N | N | N | N |
OsUBC21 | N | N | N | N | N | N |
OsUBC22 | N | N | N | N | N | N |
OsUBC23 | N | N | N | N | N | N |
OsUBC24 | + | + | + | + | + | + |
OsUBC25 | N | N | N | N | N | N |
OsUBC26 | + | + | + | + | + | + |
OsUBC27 | + | + | + | + | + | + |
OsUBC28 | + | + | + | + | + | + |
OsUBC29 | + | + | + | + | + | + |
OsUBC30 | + | + | + | + | + | + |
OsUBC31 | + | + | n | n | + | n |
OsUBC32 | + | + | + | + | + | + |
OsUBC33 | + | + | + | + | + | + |
OsUBC34 | + | + | + | + | + | + |
OsUBC35 | N | N | N | N | N | N |
OsUBC36 | N | N | N | N | N | N |
OsUBC37 | + | + | n | n | + | + |
OsUBC38 | + | + | + | + | + | + |
OsUBC39 | N | N | N | N | N | N |
OsUBC40 | + | + | + | + | + | + |
OsUBC41 | + | + | n | n | + | N |
OsUBC42 | + | + | + | + | + | + |
OsUBC43 | + | + | + | + | + | + |
OsUBC44 | + | + | + | + | + | + |
OsUBC45 | + | + | + | + | + | + |
OsUBC46 | + | + | + | + | + | + |
OsUBC47 | + | + | n | n | + | N |
OsUBC48 | + | + | + | + | + | + |
Table 1 Expression pattern of rice UBC gene family in silico.
基因 Gene | 表达诱导因素 Expression inducing factors | |||||
---|---|---|---|---|---|---|
稻瘟病菌侵染 Blast fungus infection | 盐胁迫 Salinity stress | 脱落酸 Abscisic acid | 赤霉素 Gibberellin | 细胞分裂素 Cytokinin | 寡聚糖几丁质 Chitin oligosaccharide | |
OsUBC1 | + | + | + | + | + | + |
OsUBC2 | + | + | + | + | + | + |
OsUBC3 | + | + | n | n | + | n |
OsUBC4 | + | + | + | + | + | + |
OsUBC5 | + | + | + | + | + | + |
OsUBC6 | + | + | + | + | + | + |
OsUBC7 | + | + | n | n | + | n |
OsUBC8 | + | + | + | + | + | + |
OsUBC9 | n | n | + | + | + | + |
OsUBC10 | + | + | + | + | + | + |
OsUBC11 | + | + | + | + | + | + |
OsUBC12 | + | + | n | n | + | n |
OsUBC13 | + | + | n | n | + | n |
OsUBC14 | n | n | + | + | n | + |
OsUBC15 | n | n | n | n | n | n |
OsUBC16 | + | + | + | + | + | + |
OsUBC17 | + | + | + | + | + | + |
OsUBC18 | + | + | + | + | + | + |
OsUBC19 | + | + | + | + | + | + |
OsUBC20 | N | N | N | N | N | N |
OsUBC21 | N | N | N | N | N | N |
OsUBC22 | N | N | N | N | N | N |
OsUBC23 | N | N | N | N | N | N |
OsUBC24 | + | + | + | + | + | + |
OsUBC25 | N | N | N | N | N | N |
OsUBC26 | + | + | + | + | + | + |
OsUBC27 | + | + | + | + | + | + |
OsUBC28 | + | + | + | + | + | + |
OsUBC29 | + | + | + | + | + | + |
OsUBC30 | + | + | + | + | + | + |
OsUBC31 | + | + | n | n | + | n |
OsUBC32 | + | + | + | + | + | + |
OsUBC33 | + | + | + | + | + | + |
OsUBC34 | + | + | + | + | + | + |
OsUBC35 | N | N | N | N | N | N |
OsUBC36 | N | N | N | N | N | N |
OsUBC37 | + | + | n | n | + | + |
OsUBC38 | + | + | + | + | + | + |
OsUBC39 | N | N | N | N | N | N |
OsUBC40 | + | + | + | + | + | + |
OsUBC41 | + | + | n | n | + | N |
OsUBC42 | + | + | + | + | + | + |
OsUBC43 | + | + | + | + | + | + |
OsUBC44 | + | + | + | + | + | + |
OsUBC45 | + | + | + | + | + | + |
OsUBC46 | + | + | + | + | + | + |
OsUBC47 | + | + | n | n | + | N |
OsUBC48 | + | + | + | + | + | + |
Fig. 5. Expression level of rice ubiquitin-conjugating enzyme genes after Magnaporthe oryzae inoculation. *,** indicate significantly or extremely significantly upregulated expression levels,respectively.
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